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Disclaimer: The code should be taken as is
Author: Dr. Matthew C. Schmidt
Contact: Dr. Nagiza Samatova -  Samaotva@csc.ncsu.edu
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To run the alpha-beta motif finder algorithm
./generate_ab_cliques PPFILE THRESHOLD ALPHAVALUE BETAVALUE

PPFILE  -  Two column phylogenetic profile file. First 
		   Column contains STRING Database organism ID
           Column two has P if organism is phenotype expressing and N if phenotype non-expressing
THRESHOLD - STRING network edge threshold
		   
ALPHAVALUE - alpha parameter - The cliques generated will be present in atleast ALPHAVALUE phenotype expressing organisms
BETAVALUE - beta parameter - The cliques generated will be present in no more than BETAVALUE phenotype non-expressing organisms

Example: ./generate_ab_cliques data\phylo-profiles\HvnH.pp 800 9 2